skferm package

Subpackages

• skferm.data package
  • Module contents
• skferm.datasets package
  • Submodules
  • skferm.datasets.mtp_ph module
    • files()
    • load_mtp_ph_data()
  • skferm.datasets.rheolaser module
    • files()
    • clean_rheolaser()
    • load_rheolaser_data()
  • skferm.datasets.synthetic module
    • gompertz()
    • modified_gompertz()
    • logistic_growth()
    • generate_synthetic_growth()
  • Module contents
    • generate_synthetic_growth()
    • load_rheolaser_data()
    • load_mtp_ph_data()
• skferm.growth_models package
  • Submodules
  • skferm.growth_models.gompertz module
    • gompertz()
    • modified_gompertz()
  • skferm.growth_models.logistic module
    • logistic_growth()
  • Module contents
    • modified_gompertz()
    • logistic_growth()
• skferm.plotting package
  • Submodules
  • skferm.plotting.curves module
    • plot_fermentation_curves()
  • Module contents
    • plot_fermentation_curves()
• skferm.smoothing package
  • Submodules
  • skferm.smoothing.core module
    • apply_method_to_groups()
  • skferm.smoothing.methods module
    • rolling_average()
    • exponential_moving_average()
    • savitzky_golay_smooth()
  • skferm.smoothing.metrics module
    • mean_squared_error()
    • r2_score()
    • total_variation()
    • fit_quality_metrics()
    • evaluate_smoothing_quality()
  • Module contents
    • smooth()
    • smooth_sequential()
    • total_variation()
    • fit_quality_metrics()
    • evaluate_smoothing_quality()

Module contents

Scikit-ferm: Synthetic fermentation datasets and microbial growth modeling.